This is how a chronicle report looks
This is a showcase of the outputs possible with the {chronicle} R package. For a complete how-to, please refer to the package’s github page.
This showcase includes all the elements currently supported by chronicle as of version 0.3.
Each element has its chronicle::make_* call for reference, which allows to call each one independently. If you want to create a full R Markdown report with chronicle, use the add_* family of functions instead, which have the same parametes as its corresponding make_*in this showcase
Barplots
chronicle::add_barplot()
Simple bar plot
chronicle::make_barplot(dt = iris,
bars = 'Species',
value = 'Sepal.Length',
horizontal = FALSE,
sort_by_value = FALSE,
sort_decreasing = TRUE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Bars broken by other group
chronicle::make_barplot(dt = ggplot2::mpg,
bars = 'manufacturer',
value = 'cty',
break_bars_by = 'trans',
horizontal = FALSE,
sort_by_value = FALSE,
sort_decreasing = TRUE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Bars sorted by value
chronicle::make_barplot(dt = ggplot2::mpg,
bars = 'manufacturer',
value = 'cty',
horizontal = FALSE,
sort_by_value = TRUE,
sort_decreasing = TRUE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Bars sorted by value and broken by another column
chronicle::make_barplot(dt = ggplot2::mpg,
bars = 'manufacturer',
value = 'cty',
break_bars_by = 'trans',
horizontal = FALSE,
sort_by_value = TRUE,
sort_decreasing = TRUE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Horizontally
chronicle::make_barplot(dt = ggplot2::mpg,
bars = 'manufacturer',
value = 'cty',
break_bars_by = 'trans',
horizontal = TRUE,
sort_by_value = TRUE,
sort_decreasing = TRUE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Boxplots
chronicle::add_boxplot()
Simple box plot
chronicle::make_boxplot(dt = iris,
value = 'Sepal.Length',
jitter = FALSE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Box plot by groups
chronicle::make_boxplot(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
jitter = FALSE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Box plot with jitter
chronicle::make_boxplot(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
jitter = TRUE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Split each group by a second variable
chronicle::make_boxplot(dt = palmerpenguins::penguins,
value = 'body_mass_g',
groups = 'island',
split_groups_by = 'sex',
jitter = TRUE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Code
chronicle::add_code()
This is an empty canvas for you to include any code you want.
This is some code:
data.table(iris)[, .N, Species]It can also be evaluated!
library(data.table)
data.table(iris)[, .N, Species]## Species N
## <fctr> <int>
## 1: setosa 50
## 2: versicolor 50
## 3: virginica 50Densities
chronicle::add_density()
Basic density
chronicle::make_density(dt = iris,
value = 'Sepal.Length',
faceted = TRUE,
scales = 'fixed',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Density by group
chronicle::make_density(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
faceted = FALSE,
scales = 'fixed',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Faceted densities
chronicle::make_density(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
faceted = TRUE,
scales = 'fixed',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)dygraphs
chronicle::add_dygraph()
Simple dygraph (in static outputs it will be replaced by line plots)
chronicle::make_dygraph(dt = dat,
value = 'x',
date = 'date',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Dygraph by groups
chronicle::make_dygraph(dt = dat,
value = 'x',
date = 'date',
groups = 'group',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Histograms
chronicle::add_histogram
Basic histogram
chronicle::make_histogram(dt = iris,
value = 'Sepal.Length',
scales = 'fixed',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Faceted histogram by groups
chronicle::make_histogram(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
scales = 'fixed',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Images
chronicle::add_image
This is a test image
Line plots
chronicle::add_lineplot()
Simple line plot
chronicle::make_lineplot(dt = dat,
x = 'date',
y = 'x',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Line plot with trend
chronicle::make_lineplot(dt = dat,
x = 'date',
y = 'x',
groups = 'group',
faceted = FALSE,
show_trend = TRUE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Line plot with linear trend
chronicle::make_lineplot(dt = dat,
x = 'date',
y = 'x',
groups = 'group',
faceted = FALSE,
show_trend = TRUE,
trend_method = 'lm',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Faceted line plot
chronicle::make_lineplot(dt = dat,
x = 'date',
y = 'x',
groups = 'group',
faceted = TRUE,
show_trend = TRUE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Rain cloud plots
chronicle::add_raincloud()
Simple rain cloud
chronicle::make_raincloud(dt = iris,
value = 'Sepal.Length',
adjust = 0.5,
include_boxplot = TRUE,
include_mean = FALSE,
include_median = TRUE,
force_all_jitter_obs = FALSE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Rain cloud by group
chronicle::make_raincloud(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
adjust = 0.5,
include_boxplot = TRUE,
include_mean = FALSE,
include_median = TRUE,
force_all_jitter_obs = FALSE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Larger denisty kernel
chronicle::make_raincloud(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
adjust = 1,
include_boxplot = TRUE,
include_mean = FALSE,
include_median = TRUE,
force_all_jitter_obs = FALSE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)No boxplot, just the median
chronicle::make_raincloud(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
adjust = 1,
include_boxplot = FALSE,
include_mean = FALSE,
include_median = TRUE,
force_all_jitter_obs = FALSE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)With the mean instead of the boxplot
chronicle::make_raincloud(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
adjust = 1,
include_boxplot = FALSE,
include_mean = TRUE,
include_median = FALSE,
force_all_jitter_obs = FALSE,
ggtheme = 'minimal',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Scatter plots
chronicle::add_scatterplot()
Simple scatter plot
chronicle::make_scatterplot(dt = iris,
x = 'Sepal.Length',
y = 'Sepal.Width',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Scatter plot with groups
chronicle::make_scatterplot(dt = iris,
x = 'Sepal.Length',
y = 'Sepal.Width',
groups = 'Species',
faceted = FALSE,
show_trend = FALSE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Faceted scatter plot with trend
chronicle::make_scatterplot(dt = iris,
x = 'Sepal.Length',
y = 'Sepal.Width',
groups = 'Species',
faceted = TRUE,
show_trend = TRUE,
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Tables
chronicle::add_table()
kable
| species | island | bill_length_mm | bill_depth_mm | flipper_length_mm | body_mass_g | sex | year |
|---|---|---|---|---|---|---|---|
| Adelie | Torgersen | 39.1 | 18.7 | 181 | 3750 | male | 2007 |
| Adelie | Torgersen | 39.5 | 17.4 | 186 | 3800 | female | 2007 |
| Adelie | Torgersen | 40.3 | 18.0 | 195 | 3250 | female | 2007 |
| Adelie | Torgersen | NA | NA | NA | NA | NA | 2007 |
| Adelie | Torgersen | 36.7 | 19.3 | 193 | 3450 | female | 2007 |
| Adelie | Torgersen | 39.3 | 20.6 | 190 | 3650 | male | 2007 |
DT
Violins
chronicle::add_violin()
Simple violin plot
chronicle::make_violin(dt = iris,
value = 'Sepal.Length',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Violin plot by group
chronicle::make_violin(dt = iris,
value = 'Sepal.Length',
groups = 'Species',
plot_palette = params$plot_palette,
plot_palette_generator = params$plot_palette_generator,
static = params$set_static)Big Bonus! report_columns()
chronicle also includes a function called report_columns(), that will create an entire chronicle report for a single dataset. It includes a comprehensive summary of the data through the skimr::skim() function, along with one plot for each column present in the data: bar plots for categorical variables and rain cloud plots for numerical variables. This gives you an immediate view of a dataset with a single line of code!
report_columns(dt = palmerpenguins::penguins,
by_column = 'species')you can see the example of this output here
sessionInfo
sessionInfo()## R version 4.1.0 (2021-05-18)
## Platform: x86_64-w64-mingw32/x64 (64-bit)
## Running under: Windows 10 x64 (build 19042)
##
## Matrix products: default
##
## locale:
## [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
## [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
## [5] LC_TIME=English_United States.1252
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] chronicle_0.3 data.table_1.13.6 magrittr_2.0.1
##
## loaded via a namespace (and not attached):
## [1] tufte_0.9 lattice_0.20-44 tidyr_1.1.2 palmerpenguins_0.1.0
## [5] zoo_1.8-8 digest_0.6.27 R6_2.5.0 repr_1.1.3
## [9] evaluate_0.14 httr_1.4.2 ggplot2_3.3.3 highr_0.9
## [13] pillar_1.4.7 tictoc_1.0.1 rlang_0.4.11 lazyeval_0.2.2
## [17] rstudioapi_0.13 Matrix_1.2-18 DT_0.17 rmarkdown_2.8
## [21] labeling_0.4.2 splines_4.1.0 rolldown_0.1 readr_1.4.0
## [25] stringr_1.4.0 htmlwidgets_1.5.3 munsell_0.5.0 tinytex_0.32
## [29] compiler_4.1.0 xfun_0.23 pkgconfig_2.0.3 base64enc_0.1-3
## [33] mgcv_1.8-35 htmltools_0.5.1.1 tidyselect_1.1.0 tibble_3.0.4
## [37] gridExtra_2.3 bookdown_0.21 viridisLite_0.4.0 crayon_1.3.4
## [41] dplyr_1.0.2 withr_2.3.0 grid_4.1.0 nlme_3.1-151
## [45] jsonlite_1.7.2 gtable_0.3.0 lifecycle_1.0.0 scales_1.1.1
## [49] rmdformats_1.0.1 stringi_1.6.2 farver_2.0.3 viridis_0.6.1
## [53] skimr_2.1.2 dygraphs_1.1.1.6 ellipsis_0.3.2 xts_0.12.1
## [57] generics_0.1.0 vctrs_0.3.8 RColorBrewer_1.1-2 tools_4.1.0
## [61] glue_1.4.2 purrr_0.3.4 hms_1.1.0 crosstalk_1.1.0.1
## [65] prettydoc_0.4.1 yaml_2.2.1 colorspace_2.0-0 plotly_4.9.3
## [69] knitr_1.33 pagedown_0.13